老师,请问使用lumpy做SV检测step3报错怎么修改

sh step3.lumpy.sh 

使用基因课重测序的脚本,step3报错,我单独建了一个python2.7的环境,安装了lumpy,以下是报错信息

Sourcing executables from /pub/anaconda3/envs/python2.7/bin/lumpyexpress.config ...


Checking for required python modules (/pub/anaconda3/envs/python2.7/bin/python)...

/pub/anaconda3/envs/python2.7/bin/lumpyexpress: line 15: -n: command not found

/pub/anaconda3/envs/python2.7/bin/lumpyexpress: line 16: [: ==: unary operator expected

/pub/anaconda3/envs/python2.7/bin/python: can't open file '/pub/anaconda3/envs/python2.7/bin/scripts/bamkit/bamlibs.py': [Errno 2] No such file or directory


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最佳答案 2019-12-05 10:15

lumpy 这个软件安装有点问题,会重新安装下。



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其它 0 个回答

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  • Hui 提出于 2019-12-02 17:50

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